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cmd check
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"BiocGenerics:::testPackage('PackageName')" works from R console but fails using "R CMD check PackageName" at terminal
software error
cmd check
bioconductor
9.0 years ago
Wade Copeland
▴ 20
5
votes
4
replies
1.3k
views
CMD check warning using Bioconductor as a source for the dependencies of an R package
Bioconductor
CMD check
warning
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
dong
▴ 10
1
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3
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1.5k
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How to access error log from build report
build
testthat
cmd check
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
Peter
• 0
0
votes
1
reply
1.8k
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Foreign function call to a base package in R
software error
CMD check
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
ric.romoli
• 0
0
votes
1
reply
1.5k
views
R CMD check S3 generic/method consistency WARNING
cmd check
warnings
s3
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
anthonycolombo60
• 0
5 results • Page
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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